fermi_surface/perform_calculations.md

@@ -2,27 +2,27 @@
 
 ## Setting the inputcard and writing out the $`\mathcal{T}`$-matrix and Green's function
 
-   - Create the folder **__fermi__** and copy on it the following files : *potential*, *inputcard*, *shapefun* and *kkr.x*.
-   - Write-out the t-matrix and Green-function:
-      - Set the running option `FERMIOUT`
-      - Set the temperature to 0.00
-      - Increase the cluster size (`R_xy` and `R_z`) such that there are at least 300 atoms in the cluster.
-      - Define the energy contour, with only one energy point. e.g
+- Create the folder **__fermi__** and copy on it the following files : *potential*, *inputcard*, *shapefun* and *kkr.x*.
+- Write-out the t-matrix and Green-function:
+  - Set the running option `FERMIOUT`
+  - Set the temperature to 0.00
+  - Increase the cluster size (`R_xy` and `R_z`) such that there are at least 300 atoms in the cluster.
+  - Define the energy contour, with only one energy point. e.g
 ```
 EMIN EMAX TEMPR NPOL NPT1 NPT2 NPT3
 E    E    000.0 0    0    1    0
 ```
 where `E` is the energy.
 
-    - Set STEPS=1.
-    - Run one single iteration : `mpirun -np XX kkr.x`. Some *TBkkr* files should be written out. These files contain the Green function and t-matrix of the system.
+- Set STEPS=1.
+- Run one single iteration : `mpirun -np XX kkr.x`. Some *TBkkr* files should be written out. These files contain the Green function and t-matrix of the system.
 
 #### Perform the Fermi surface calculation
 
-  - Create the folder **surf** and copy on it the following files : `Pkkr.x` and `fermi/TBkkr*`: (Some of these files can be quite big. So creating links might be the better idea: e.g. 
+-  Create the folder **surf** and copy on it the following files : `Pkkr.x` and `fermi/TBkkr*`: (Some of these files can be quite big. So creating links might be the better idea: e.g. 
   `ln -s fermi/TBkkr_* .`)
-  - Set the [inputFs](fermi_surface/inputfs_file) file.
-  - Start the calculation : `mpirun -np XX Pkkr.x`
+- Set the [inputFs](fermi_surface/inputfs_file) file.
+- Start the calculation : `mpirun -np XX Pkkr.x`
 
 #### Spin and velocity calculations
 
@@ -32,6 +32,6 @@ the folder **surf\_vis** (for the visualisation set) or
 set will be treated in this paragraph but all the steps are similar for
 the integration set.
 
-  - Copy all the content of the **__surf__** folder into the new folder : `cp -r surf surf_vis`
-  - Set the [inputFS for spin and velocity](fermi_surface/inputfs_file_for_spin_and_group_velocity) calculations in **__surf_vis__**.
-  - Start the calculation : `mpirun -np XX Pkkr.x`
+- Copy all the content of the **__surf__** folder into the new folder : `cp -r surf surf_vis`
+- Set the [inputFS for spin and velocity](fermi_surface/inputfs_file_for_spin_and_group_velocity) calculations in **__surf_vis__**.
+- Start the calculation : `mpirun -np XX Pkkr.x`