Added some more documentations, added io.rst.
Converted scale to floats everywhere it is set by default.
Removed superfluous enumeration in reader/writer in io_field.
Fixed vector default and name saving in ovf.py.
Fixed vector default and necessity of dim in tec.py.
Fixed erronous dim -> scale assignment in vtk.py.
Fixed interp_to_regular_grid not using the multidim. scale correctly.

due to origin being lower, not higher as is default in maptlotlib

utils: Has quaternion and misc submodules
    misc has levi_civita and interp_to_regular_grid (used later for io)
field: Added HyperSpy support (get/set_signal)
    added copy/rotate/rot90/set_vector/get_vector methods

Also added mayavi to requirements in setup.cfg and environment.yml.
Added documentation on how to activate 3D notebook plotting with mayavi.
Fixed some bugs in io_field.py.
Fixed bug in reader of llg.py.

due to origin being lower, not higher as is default in maptlotlib

utils: Has quaternion and misc submodules
    misc has levi_civita and interp_to_regular_grid (used later for io)
field: Added HyperSpy support (get/set_signal)
    added copy/rotate/rot90/set_vector/get_vector methods

Done by envoking python setup.py clean before!

Deleted print statements, superfluous log, TODOs, added a few comments.

Added the fields submodule with field, shapes and vectors!
Added the vis module (not viz) with colors, decorators, plot2d, tools.
Added version.
Minor changes in pyramid.

conf.py: uncommented path  finding for sphinx to find docs folder.
index.rst: Added modules.rst as an overview.
make.bat, Makefile, pyramid.rst: Deleted!
utils: put many functions in convenience.py
environment.py: Added stuff for documentation
README.md: deleted badges (directly on GitLab now!)
setup.py: Further streamline!

docs: moved up one level.
plottools: added some default label sizes.
version: added to VCS and added a TODO (switch to Git)
fielddata: added rot90 for ScalarData, lot of small changes.

fielddata and phasemap: Now use the new plottools module, cleanup of arguments
                        and documentation.
plottools: New module for pretty plotting and different annotations like text,
           colorwheels and colorbars.
colors: Colorbar now has a black circle outline and arrows pointing in cardinal
        directions.
diagnostics: Small documentation fixes and naming 'avg' --> 'avrg'.
docs: Renewed documentation.

Added .idea folder with PyCharms settings.
Changed icon.ico (now round).
PhaseMap and MagData: Now use h5py to load/save data (via HyperSpy).
Deprecated loading routines (x3d) are gone now!
tests: All tests now reflect this change.
scripts: Streamlined some scripts. Many are now in separate project:
Script-Vault

package: some minor corrections (mainly import statements), some old functions
         were revived (e.g. in MagData)

scripts: adaption to the new structure and sorting (more work is to do here...)

_version: __version__ string is now imported from this file

phasemapper_core.pyx: added to separate the corresponding numcore_functions
                      from kernel_core.pyx

Renames:
datacollection --> dataset
optimizer      --> reconstruction

scripts:
interactive_setup is now implemented in an extended Spyder startup file.
some other scripts are now
the rest is NOT adapted, yet, which is the next task at hand
furthermore scripts will be sorted and unused ones deleted in the next commit

regrid: Added many scripts for regridding by Jörn
logging: Introduced logging
scripts: Added Scripts for regridding and simulating stuff for cooperations
removed: Unused test scripts
structure: Many new restructuring aspects already implemented

Replaced res with a for the grid spacing
(resolution is a reserved word in electron microscopy
Work in progress: jacobi matrix for projection

pyramid: all docstrings in numpydoc (package installed) format (used by spinx)
holoimage: removed error, phase was falsely multiplied by pi/2
magcreator: removed create_mag_dist_comb, renamed functions for disc and vortex
magdata: Allows creation of empty MagData objects and easy adding of magnitudes
phasemap: Allows units to be set for plots, added 3D plot
phasemapper: Electrostatic component implemented
projector: Projection now includes thickness profile
docs: support for html, latex and pdf (experimental), use "make *" in shell
scripts: new structure, deleted some compare_* functions, added test_methods
.hpignore: now also ignores *.c and _* files (_build used in docs)