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  1. Jul 30, 2015
  2. Jul 16, 2015
    • Jan Caron's avatar
      Phase offset and ramp can now be fitted! Many updates and fixes to plotting! · 622c59d8
      Jan Caron authored
      colormap: New module with colormap subclass which has special functions to
                calculate directional rgb-colors, now used in many plots!
      __init__: On star import now also has abbreviations for a few modules.
      fwd_model: Now has flags for fitting an offset and/or ramp.
                 CAUTION: will be moved next update to new class!
      magdata: Removed colorwheel stuff (all moved to 'colormap'). Overhaul of quiver
               plot in 2D and 3D. Now shows mask and uses new colormap for angular
               color coding.
      phasemap: Now uses the new colormap for holo plots. Removed color wheel (moved
                to the new class). Added function to add ramps.
      phasemapper: Now handles also offsets and ramps in the phase.
                   CAUTION: will be moved next update to new class!
      projector: Fixed bugs in SimpleProjector. 1) leftmost pixels are no longer moved
                 moved to left corner of padded projection (when dim_uv is not None).
                 2) odd padding when using dim_uv are now handled properly (one more
                 pixel on top and right if necessary).
      costfunction: n is now taken from the fwd_model instead of the data_set.
      dataset: Introduced the count variable which gives the number of images.
      magcreator: In the process of updating, more on next commit.
      reconstruction: Also handles ramps and offsets now, properly extracts them after
                      reconstruction.
      regularisator: New argument 'add_params' is used to cut off input (for offset
                     and ramp) which are not used in the regularisation.
      scripts: several small changes...
      622c59d8
  3. Jun 02, 2015
    • Jan Caron's avatar
      Smaller changes, cleanup and script structure changes! · 42f8bc5f
      Jan Caron authored
      Phase maps now also have a mask and a confidence matrix.
      Began new script structure (temporary folders created).
      Cleanup, logging and documentation done.
      config: NTHREADS is now set here.
      dataset: Method for creating 3D masks added.
      phasemap: Mask and confidence matrix added. Padding and cropping supported.
      forwardmodel: Stubs for multiprocessing added (next TODO!).
      kernel: Added support for perturbed reference wave.
      magdata: Padding and cropping supported.
      projector: New property 'sparsity' introduced.
      regularisator: Stub for ComboRegularisator added (next TODO!).
      tests: Changed accordingly.
      42f8bc5f
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